Protein Info for Pf1N1B4_148 in Pseudomonas fluorescens FW300-N1B4

Annotation: Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1928 transmembrane" amino acids 290 to 309 (20 residues), see Phobius details amino acids 685 to 706 (22 residues), see Phobius details PF00668: Condensation" amino acids 49 to 487 (439 residues), 362.5 bits, see alignment E=6.3e-112 amino acids 1095 to 1535 (441 residues), 234.9 bits, see alignment E=3.2e-73 amino acids 1556 to 1885 (330 residues), 250.4 bits, see alignment E=6.5e-78 PF00501: AMP-binding" amino acids 507 to 856 (350 residues), 260.1 bits, see alignment E=6e-81 TIGR01733: amino acid adenylation domain" amino acids 527 to 930 (404 residues), 383.4 bits, see alignment E=1.2e-118 PF13193: AMP-binding_C" amino acids 914 to 991 (78 residues), 34.9 bits, see alignment (E = 5e-12) PF00550: PP-binding" amino acids 1016 to 1077 (62 residues), 55.8 bits, see alignment (E = 9e-19) TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 1396 to 1548 (153 residues), 143.8 bits, see alignment E=3.9e-46

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1928 amino acids)

>Pf1N1B4_148 Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules (Pseudomonas fluorescens FW300-N1B4)
MSGNMAERIAKRFVGLPLEQRRLFLAKLREEGKDFSLLPLPVSRHDCAVIPLSFAQQRLL
FLWQLDPQSAAYNMAAGLRLHGQLNETALLRSFDHLVARHEVLRTVFQTDNDQPSQVILD
QQSVPLQRVDLSNVAVQEREAELARRVQEAAAQPFDLLHGPLLRASLFRLADDEFVLIVS
MHHIVSDGWSMDVMVKEFVQCYQAFSLEREPQLPALPLQYADYAIWQRRWLEAGEGERQL
DYWRQQLGEEHPLLDVAADFPRPLTQSFEGQTLSFDFGADLSRQLNGFARAQGISLFMLV
LAGFSLFLSRLGGQRDIRVGVPNANRGRSEVEGLIGFFVNTQVLRCQVDERGSFVDLLAR
VREASFGAQAHQELPFEQLVDELVPERTLGHNPLFQAKFNQNVGMQTQRSVNLPGLSVTE
YPLDKEGTHFDLALDITDDGTLIHGQMTYASDLYQHSTIEGFIPTLLGLFRELLSAPQAP
LHSLATTPVPPALTPRQPAESVLQQWDRQVAEQPEALAARCLERTLSFQTLDQDANRLAH
YLRAQGVQSGQPVAVLMERSLEWLTCVLGVIKAGAVYMPLDLKAPDARLQQMLVGAQAKV
LLCAAGDARESTLAVAGCQGLAFAPERWQDQPATKPSLTVSADAAAYVIHTSGSTGQPKG
VLVSHGALASYVRGALERLALEPAASMALVSTIAADLGFTVLFGALCSGRLLHVLPDELG
FDPDRFADYMAEHQVGVLKIVPGHLAALMQASRAADVLPQHALIVGGEACSPALLEQVRR
LKPGCRFINHYGPSETTVGVLTHELKDLDSGARSVPVGRPLPGAHVYVLDDVLNAVADQV
AGELYIGGDSVALGYLGQPGLTAERFLPDPFGAVGARVYRSGDRVRRNRQGALEFIGRAD
DQVKVRGYRVEPAEVARVLLGLNGVSEAAVLALPLDGDETRLQLVAYCVAAPDLALNVDD
LRQQLQACLPEYMVPAQIVVLERLPLTANGKLDKRALPAPGLVTQQFVAPVGEVEQKLAA
IWADVLKLEQVGSTDNFFELGGDSILSLQIIARAKRQGIKLSPKQLFEKQTIAQLAAVAK
LIESKPAASVAQKISGELPLLPIQARFFQTDIPQRHHWNQSVMLQPQIPLDATHLHNALM
ALIEQHDALNLNFQASGETWQATFQAQRHTDLLWVRALDDLADLPALATEAQRSLDLQQG
RLVRGVLVNLPDATQRLLLVIHHLVVDGVSWRVLLEDLQQAYTALAAGKAMVLPGKSSSL
QAWAQHLHRYGQSDTLKAERDYWQRTLEGGNSDLPRDFPETVQTRRQAARATSRLNKTLT
HALLKVAPAAYRTQINDLLLTALARVLCDWSEQDSVLIQLEGHGREDLFDDLDLSRTVGW
FSSLFPVRLTPQAEPGTSLCAIKEQLRAVPGKGIGYGVLRYLAGFEPLRDLPQPRITFNY
LGQFDGAFDAADGALLVPTADSTGEHQDDDAPLGNWLSVDGQVYGGELELSWTFGQGMYR
PQTIQALADAYCHELERLIEHCTAGEHAGVTPSDFNLLSLTQAQLSALPVPARDISDLYP
LSPMQQGILFHSLNEPDGPAYTNQLRVDVRQLDAERFSQAWQQTLEAHEILRTVFVWPED
ADAPVQIVRQTVQMPMTVQDWRGRDDLHAALDQLAREDLAAGFELDQAPLLRVLLVRTAE
AQHHLIYTSHHILMDGWSTSQLFGEVLQRYAGMTPAAAPGRYRDYIEWLGQRDTQASREF
WRSALVDLQEPTRLASAMPVSQTLASGYADYQHVFSEQQTGDLNRFAREQKVTLNTLMQA
AWLVLLQRYTGQDTVSFGATVAGRPTDLPGVEQQIGLFINTLPVVAAPSAEIPVGQWIQQ
VQSLNLALREHEHTPLYDIQRWAGRARARCLTVFWCSRTTRWLKPWRKALPPGWSFPPSC
VRSRPTIR