Protein Info for Pf1N1B4_1399 in Pseudomonas fluorescens FW300-N1B4

Annotation: FIG003573: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 transmembrane" amino acids 16 to 41 (26 residues), see Phobius details amino acids 48 to 65 (18 residues), see Phobius details amino acids 71 to 87 (17 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 149 to 173 (25 residues), see Phobius details amino acids 193 to 212 (20 residues), see Phobius details amino acids 218 to 241 (24 residues), see Phobius details amino acids 249 to 275 (27 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 93% identity to pfo:Pfl01_0536)

Predicted SEED Role

"FIG003573: hypothetical protein" in subsystem CBSS-262719.3.peg.410

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166N5Z0 at UniProt or InterPro

Protein Sequence (297 amino acids)

>Pf1N1B4_1399 FIG003573: hypothetical protein (Pseudomonas fluorescens FW300-N1B4)
MRALAEFIMRGRMQATLVVAGCATLPLLYWLGAAAGCLVLLRRGLKDALGVLALGLLPAL
IWWLYSDDPRALLVLLGSSSLALVLRASESWNRVLLVSIAMGLVFSVVLGAAFAPQIEML
AQALIKVMPSLLGDVYQQLSVDEQARFASLIAPVLTGLIAALLQIVSVLSLIVGRYWQAL
LYNPGGFGREFRAIRIPLLPAMLLLVLMLLGPNLGSQMAMLTPLCSVPLVFAGLALIHGL
VAQKRLAKFWLVGLYVTLLLFMQLIYPLLVVLAIVDSLIDFRGRSAPKDADNANGEG