Protein Info for Pf1N1B4_1392 in Pseudomonas fluorescens FW300-N1B4

Annotation: Protein containing domains DUF404, DUF407, DUF403

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 828 transmembrane" amino acids 635 to 651 (17 residues), see Phobius details amino acids 672 to 688 (17 residues), see Phobius details PF04174: CP_ATPgrasp_1" amino acids 81 to 412 (332 residues), 373 bits, see alignment E=1.9e-115 PF14403: CP_ATPgrasp_2" amino acids 81 to 459 (379 residues), 528.8 bits, see alignment E=1.1e-162 PF04168: Alpha-E" amino acids 509 to 815 (307 residues), 221.2 bits, see alignment E=3.9e-69

Best Hits

KEGG orthology group: None (inferred from 95% identity to pfo:Pfl01_0542)

Predicted SEED Role

"Protein containing domains DUF404, DUF407, DUF403"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z0V6 at UniProt or InterPro

Protein Sequence (828 amino acids)

>Pf1N1B4_1392 Protein containing domains DUF404, DUF407, DUF403 (Pseudomonas fluorescens FW300-N1B4)
MPDLLDRYPLTAGTYHELLDDSGAVRPHWRRLFDQLQRSTPAQLVQRQALLTRQIQENGV
TYNVYADPKGADRPWELDLLPHVIDADEWEQLSAGIAQRARLLNAVLADLYGPQRLIAEG
LLPAELVFGHNNFLWPCQGISPPDGAFLHLYAVDLARTPDGRWWVTADRTQAPSGAGYAL
ENRTIVSRAFPELYRDLKVQHLAGFFRTLQETLARQAPSDDEAPLVVLLTPGRFNESYFE
HLYLARQLGYPLVEGGDLTVRDATVYLKTLSGLRRVHAIMRRLDDDFCDPLELRTDSALG
VPGLLEAVRQGRVLVANALGSGVLESPGLLGFLPKINQYLFGEELILPSIATWWCGEAPV
LAQALEKLPELLIKPAFPSQSFAPVFGRDLSEKQRQALAERMQARPYAYVAQELAQLSQA
PIWQAEGGQLQPRAIGMRVYAVASRDGYRVLPGGLTRVAAEADAEVVSMQRGGASKDTWV
LGDRPPSGEQWKAQRNIGVHDLVRRDPYLPSRVVENLFWFGRYCERCDDSARLLRIMLAR
YVDGDDPQALEAAVDLGERLNLLPEEGELPERLLAALLGDDWPFSLRSNLQRLQWAASQV
RGKLSRENWQALVELQREAMELETEEPDFGELLDFLNRLVMSLAALSGFALDDMTRDEGW
RFLMIGRRIERLQFLSGSLAAFLRGAGTFDQAGLEWLLELGNSSITYRSRYLAVAQLIPV
LDLLLLDEQNPHAVLFQLKLVTRTLKRLNDDFGAPRETGLPQLVERLARFDLGCLENSLF
GEASVRAAIEGLADLLQEIADASGQVSDRLALRHFAHVDDVSQRTVSV