Protein Info for Pf1N1B4_138 in Pseudomonas fluorescens FW300-N1B4

Annotation: Putative dipeptidase, pyoverdin biosynthesis PvdM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 458 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF01244: Peptidase_M19" amino acids 52 to 440 (389 residues), 325.5 bits, see alignment E=1.7e-101

Best Hits

KEGG orthology group: None (inferred from 85% identity to pfo:Pfl01_1853)

Predicted SEED Role

"Putative dipeptidase, pyoverdin biosynthesis PvdM" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162BH62 at UniProt or InterPro

Protein Sequence (458 amino acids)

>Pf1N1B4_138 Putative dipeptidase, pyoverdin biosynthesis PvdM (Pseudomonas fluorescens FW300-N1B4)
MAMTKTRSKKALYLGLPLALAISAGAGWLVWDYGFKDNPGYPVKVMKQATELQERILSFD
SHITVPLSFGAHGNEADKDGSGQFDLIKANRGRLSGAALTVFGWPEMWNGPNAPHRPTDG
FVEEARNQQEVRYKIISGLVRDFPNQVGIAYTPDDFRRLHGEGKFAIFISMLNAYPLGND
LSKLDLWAARGMRMFGFSYIGNNSWADSSRPLPFFNDSPDALDGLSDIGKQAVQRLNDLG
VIIDVSQMSSKGLEQVAQLSRTPMVASHSAPRASVDIPRNLSDKELQLIKNSGGVVQVVG
FSQYLKPLTQGTQDKLNALRTRFDLPPLPNLAMALMPGDPIITAWSEQKLGQYASGLYAI
LEEEPKATLKDLGDAIDYTVRKVGIDHVGIASDFNDGGGIKGWENVGEIRNVTAELIQRG
YSEADIAKLWGGNFLRVWEQVQKAAKPTLISRQEPVKP