Protein Info for Pf1N1B4_1264 in Pseudomonas fluorescens FW300-N1B4

Annotation: Integral membrane efflux protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 40 to 60 (21 residues), see Phobius details amino acids 71 to 90 (20 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 136 to 159 (24 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details amino acids 210 to 229 (20 residues), see Phobius details amino acids 248 to 267 (20 residues), see Phobius details amino acids 281 to 298 (18 residues), see Phobius details amino acids 304 to 325 (22 residues), see Phobius details amino acids 337 to 362 (26 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details PF05977: MFS_3" amino acids 9 to 272 (264 residues), 34.7 bits, see alignment E=7.4e-13 PF07690: MFS_1" amino acids 12 to 351 (340 residues), 60.8 bits, see alignment E=1.2e-20

Best Hits

KEGG orthology group: None (inferred from 82% identity to pfo:Pfl01_0659)

Predicted SEED Role

"Integral membrane efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166N3I2 at UniProt or InterPro

Protein Sequence (404 amino acids)

>Pf1N1B4_1264 Integral membrane efflux protein (Pseudomonas fluorescens FW300-N1B4)
VNSTRNAQLIIAARLISDFGAFLNMVALATYVYLLSNSAMSVGIFLASRVAGGIFASLIG
TRFYRRWAGRLPLIAFDLLRAGLLGLLLVLPVTQQALLLPLIAFGLGFGNSMFAIGLNSQ
LPHMIDKAQLLKTNAWMTSASSAAMVGGSLVAGLLVAGFGFETVFALNVATYLLAALLIV
PLRFPRPAPSDEPHHQQGEWSALRQGLRTAPVLAAMLAVAMADTLGSAAHNVGFPIISKL
LTPESASTTLGMMLAVWASGKFIGARVASRLKGTDNVHLERRFFFGVLLMSCGFILMFQQ
QTLYGLLLFSLPAGLGDGFSEVGLMSRLQREPDNLRLPIFSFLTLLQMTGFGIGMLIAAP
FYSCWTPGAVVLLFHGIPLTTLLVAKGVALRNGRVRRSSPTPAP