Protein Info for Pf1N1B4_1183 in Pseudomonas fluorescens FW300-N1B4

Annotation: Sodium-dependent transporter family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 59 to 81 (23 residues), see Phobius details amino acids 117 to 137 (21 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 188 to 210 (23 residues), see Phobius details amino acids 221 to 247 (27 residues), see Phobius details amino acids 268 to 291 (24 residues), see Phobius details amino acids 311 to 334 (24 residues), see Phobius details amino acids 361 to 364 (4 residues), see Phobius details amino acids 371 to 389 (19 residues), see Phobius details amino acids 403 to 429 (27 residues), see Phobius details PF00209: SNF" amino acids 120 to 328 (209 residues), 57.1 bits, see alignment E=7.1e-20

Best Hits

KEGG orthology group: K03308, neurotransmitter:Na+ symporter, NSS family (inferred from 95% identity to pfo:Pfl01_0756)

Predicted SEED Role

"Sodium-dependent transporter family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z5G3 at UniProt or InterPro

Protein Sequence (430 amino acids)

>Pf1N1B4_1183 Sodium-dependent transporter family protein (Pseudomonas fluorescens FW300-N1B4)
MVGVYGGGAFVLMFLACIALIGVPVMLAETLIGRRARQSPANALKVLALEAGHSAKWSWG
AFAGMITALLILSFYSVVGGWSLDYIIDMGRGDFQGATPDQVGAYFGNVIADPWRLTLWH
TIFMLLSAVVIAKGVVAGLERSLRIMMPLLFVMVIVLLGYSMTTGHFMEGVHFMFDFHPE
KVLDGLLPAMGHAFFSLSVGVGSIMIYGAYMPKSSSISGTIVGVALLDTFVSLVAGLALF
PIVFAAGLNPSEGPGLMFVSLPFAFGNVAFGQLMGVVFFVLVAIAAWSSAISLLEPMVAY
LVERTKISRAWVTFWLAFICWFVGLGTVFSFNIWKQAKFFVNEGGMFHLYQWGAAGGLDF
FGVIDFFTSRIMLPLGGLCFVVFAGWVMGREAVRDELSIRRPVLFALSLFLMRYVAPIGI
LVVFAAQLWK