Protein Info for Pf1N1B4_1148 in Pseudomonas fluorescens FW300-N1B4

Annotation: Putative deoxyribonuclease YjjV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 258 PF01026: TatD_DNase" amino acids 4 to 257 (254 residues), 229.6 bits, see alignment E=2.1e-72

Best Hits

KEGG orthology group: K03424, TatD DNase family protein [EC: 3.1.21.-] (inferred from 85% identity to pfo:Pfl01_0791)

Predicted SEED Role

"Putative deoxyribonuclease YjjV" in subsystem Deoxyribose and Deoxynucleoside Catabolism or YcfH

Isozymes

Compare fitness of predicted isozymes for: 3.1.21.-

Use Curated BLAST to search for 3.1.21.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166N111 at UniProt or InterPro

Protein Sequence (258 amino acids)

>Pf1N1B4_1148 Putative deoxyribonuclease YjjV (Pseudomonas fluorescens FW300-N1B4)
VELIDTHTHLDFPDFDVDRQALLAESRALGVRRMVVLGVYQANWQRVWDLVQSDPDLHAA
FGLHPVYLDDHRPEDLTELGDWLTRLAGHRQLCAVGEIGLDYFIETLDRERQQALFDAQL
QLAADFNLPALIHVRRSHAAVIATLKRFRLKRAGIIHAFAGSQEEAREYIKLGFKLGLGG
AATWPQALRMHRVLAGLPLESVVLETDSPDMAPAMFPGQRNSPAHLPAICAALAAIMAVS
PERLASASTTNACELFNW