Protein Info for Pf1N1B4_1097 in Pseudomonas fluorescens FW300-N1B4

Annotation: Rod shape-determining protein MreD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 163 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 38 to 58 (21 residues), see Phobius details amino acids 70 to 92 (23 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 133 to 153 (21 residues), see Phobius details PF04093: MreD" amino acids 8 to 150 (143 residues), 109.1 bits, see alignment E=1.2e-35 TIGR03426: rod shape-determining protein MreD" amino acids 9 to 153 (145 residues), 118.6 bits, see alignment E=1.2e-38

Best Hits

KEGG orthology group: K03571, rod shape-determining protein MreD (inferred from 94% identity to pfl:PFL_0898)

Predicted SEED Role

"Rod shape-determining protein MreD" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z5B3 at UniProt or InterPro

Protein Sequence (163 amino acids)

>Pf1N1B4_1097 Rod shape-determining protein MreD (Pseudomonas fluorescens FW300-N1B4)
MGGTTSSRNGWMVWLTFAIGMLLSVSPLPQFMEILRPLWLALLLAFWALALPQKVGMVTA
WCLGLAEDVLYGTLLGQNALILTLITFLVLSLQQRLRMFPMWQQSLVILVIFGLAQLVQL
WLSALTGNRQPTLALVLPALVSALLWPWISYGLRGLRRRYKIN