Protein Info for Pf1N1B4_1069 in Pseudomonas fluorescens FW300-N1B4

Annotation: YrbA protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 79 PF01722: BolA" amino acids 23 to 70 (48 residues), 30.6 bits, see alignment E=1.6e-11

Best Hits

Swiss-Prot: 41% identical to Y1082_HAEIN: Uncharacterized protein HI_1082 (HI_1082) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 91% identity to pfs:PFLU0893)

Predicted SEED Role

"YrbA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MZH7 at UniProt or InterPro

Protein Sequence (79 amino acids)

>Pf1N1B4_1069 YrbA protein (Pseudomonas fluorescens FW300-N1B4)
MQAVEVKSFLEGKLPGIQVEVEGEGCNFQLNVISDELAALSPVKRQQSIYAHLNPWIADG
SIHAVTMKFFSSAAWAERT