Protein Info for Pf1N1B4_1028 in Pseudomonas fluorescens FW300-N1B4

Annotation: Transcriptional regulator, LuxR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 801 PF17874: TPR_MalT" amino acids 381 to 693 (313 residues), 63.5 bits, see alignment E=3.2e-21 PF00196: GerE" amino acids 738 to 794 (57 residues), 67.2 bits, see alignment 1.1e-22

Best Hits

KEGG orthology group: None (inferred from 68% identity to pfo:Pfl01_0907)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162BJ74 at UniProt or InterPro

Protein Sequence (801 amino acids)

>Pf1N1B4_1028 Transcriptional regulator, LuxR family (Pseudomonas fluorescens FW300-N1B4)
LLAECLLQAPTQCRVHWLPLSGVAWSAADFRQRLAETLGLASSDETGLLGDLARLQTPAW
LFLDDYCRLPNPELDQLLDRMLAISSPMLTWWLGARRRPQCNWPRLLLDDELYECENASL
AFTQGEVEQILQPWVPEQTGKVASRIIQRTGGWCAGVRIALLHKCDWSRQDNSLGRAATL
LDYLEHELFSSLTPELSEAWRVLAHLPRFNARLCDHLFGAGEGAQYLRTLQALGCFIEPW
GDSSDWLQIFTPFTQLLRDEQWPAGRSWHRRACQWFCAEQDWKSAFEQALLAEEYEVAVS
LLQHFSFEHLFEEQMVVLLLRLHEQQGEELTLGSPQLVGLITAALLFAGRFELATACIAH
LAHFTPQPSAVLQRQLIARWQALQGWLLHLQGRMETSRAHFLDALSALDPECWTARLMCL
SGLTQQALLRGELDVAHAHNREALCLARGQGSLVFEGLMELDHAQLLEQRGAAVRAESVL
TNMYELLCQQTDRPIPLLGRIDLRRGRLALCMGQEERAAELFQRGLDDCLRSHDKRVLYG
FLGLAQLAANQGDYAQAFVRLRDAERLMQQRLIPETVYRGVLLQVSSHFWLQQGRAELAC
EALSRVLNHYRGPQAQQAPPATLELIPRIEYLLILAKVRLEHDASDAAAQLESLMEQAQA
REMWALATELQLALAEVLWLEGQTAKAIDALQEGERNVARYQTRQLLSELRQRQPLLLNE
QATLLASDQLCMRTGETDTLSQRELQVLKLIAQGHSNQEIAEVLFISLHTVKTHTRRIHA
KLRVERRTQAVAKAKLLGLWN