Protein Info for PFLU_RS31445 in Pseudomonas fluorescens SBW25-INTG

Annotation: colicin immunity protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 103 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 28 to 47 (20 residues), see Phobius details amino acids 74 to 98 (25 residues), see Phobius details PF03526: Microcin" amino acids 32 to 71 (40 residues), 40.5 bits, see alignment E=9.8e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (103 amino acids)

>PFLU_RS31445 colicin immunity protein (Pseudomonas fluorescens SBW25-INTG)
MIISVGIFILFFTNWFGGETFVERTNPIFLTLGVCSTFLFPFSRMIIEKTALRFTTPEFW
TTGLFTESPGKNGLYAIFYVVCTILAVPICGIYLMYMALKKVA