Protein Info for PFLU_RS30610 in Pseudomonas fluorescens SBW25-INTG

Annotation: IS3 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 116 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF13333: rve_2" amino acids 67 to 116 (50 residues), 31.4 bits, see alignment E=8.4e-12

Best Hits

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (116 amino acids)

>PFLU_RS30610 IS3 family transposase (Pseudomonas fluorescens SBW25-INTG)
MQKSTALLPAFIQLPMQLAVANSHAASSNICVEIQYPRGAGKVNWPTESAVACATFLHKR
SMNPTFFFQLLKRERIKRKIYSTRKDARSDMFVYIEMFYNVKRRHDFNNQLSPIEF