Protein Info for PFLU_RS29735 in Pseudomonas fluorescens SBW25-INTG

Annotation: HlyC/CorC family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 446 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 116 to 136 (21 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details PF01595: CNNM" amino acids 21 to 207 (187 residues), 173.8 bits, see alignment E=4.4e-55 PF00571: CBS" amino acids 237 to 287 (51 residues), 34.3 bits, see alignment 3.6e-12 amino acids 303 to 353 (51 residues), 28.7 bits, see alignment 2e-10 PF03471: CorC_HlyC" amino acids 372 to 442 (71 residues), 59.1 bits, see alignment E=5.2e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU6041)

Predicted SEED Role

"Phosphate regulon metal ion transporter containing CBS domains"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K4C8 at UniProt or InterPro

Protein Sequence (446 amino acids)

>PFLU_RS29735 HlyC/CorC family transporter (Pseudomonas fluorescens SBW25-INTG)
MDPSPGITLATLFADFGMILFALVLVLLNGFFVAAEFAMVKLRSTRVEAIAHTNGWRGQI
LRTVHSQLDAYLSACQLGITLASLGLGWVGEPAFAHILEPLLGAAGVESPEVIKGVSFFA
AFFVISYLHIVVGELAPKSWAIRKPELLSLWTAVPLYLFYWAMYPAIYLLNASANAILRI
AGQGEPGPHHEHHYSREELKLILHSSRGQDPSDQGMRVLASAVEMGELEVVDWANSREDL
VTLDFNAPLKEILALFRRHKFSRYPVYDAVRNEFVGLLHIKDLLLELAALDHIPESFNLA
ELTRPLERVSRHMPLSQLLEQFRKGGAHFALVEEADGKIIGYLTMEDVLEVLVGDIQDEH
RKAERGILAYQPGKLLVRGDTPLFKVERLLGVDLDHIEAETLAGLIYDTLKRVPEEEEVL
EVEGLRIIIKKMKGPKIVLAKVLLLD