Protein Info for PFLU_RS29075 in Pseudomonas fluorescens SBW25-INTG

Annotation: fimbria/pilus outer membrane usher protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 795 PF13954: PapC_N" amino acids 5 to 140 (136 residues), 35 bits, see alignment E=2e-12 PF00577: Usher" amino acids 157 to 705 (549 residues), 258.5 bits, see alignment E=2.4e-80 PF13953: PapC_C" amino acids 714 to 772 (59 residues), 37 bits, see alignment 3.8e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU5908)

Predicted SEED Role

"Beta-fimbriae usher protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K3Z8 at UniProt or InterPro

Protein Sequence (795 amino acids)

>PFLU_RS29075 fimbria/pilus outer membrane usher protein (Pseudomonas fluorescens SBW25-INTG)
MGEGFDLAALTSLGIDPQVSEYFRSAARFREGVHVVGLRVNGTPLGLVDARFDYQGQLCF
TPALLAKAGLVTPSRVLREGITPDQACHDFVGEYPATMVRLRPSSDEITLVVPTQSLREP
EWETGNFSQGGAAALFNYDILGFDTHSRGGPSRFVSAYTEAGFNLGNWIVRSRQFYVSDN
GKTRTEQVNAYAQRDIAALQSTFQVGQISSNNPIFGGVQLTGLQFSPDGQQRTGAGDSNV
VVEGLAQSQSRVEVRQSGALIHSTLVPEGPFRLTGLPLLNSTSDLDVSVIDVRGAKRSFV
VPAASFRGGAPVEPGYYFSLGKVRETSLDNRESPVVAMGSGTWGLGQRSSLGFGLLSTDE
YQSAGGSLSSVFFHQVTVGVRHNLSRDAQDEVGGARSTLSLGTPLFANLDINLSASAQSR
GYREVLDAGQASRGYDLDARFKRQYTAGLSWADPSLGGFSLGFTRNSQFDGHSNDHLFAS
WNNTFNGVGVALIADAQVGATEPRRLDPVRGGRRDERLDEGTSVRLQVTVPLGDDRRVSA
YVSRRGDRLDAGTALSERVNDYVNYEVGVDRDLKEREQSVRGRVDILPLYTRVSLGVDRD
PSNTNYSGQLQGGIVAHEHGVTFSPYAVQDTFGIVSVGDIGAAKVSTPQGPVWTDFSGQA
VIPGLQAYSNNHLQVQTQSLPKRVDLKNGTKVLAAGRGSVNILNFDVVKVRRLLLEAQDE
QGRPLPQGAAVFGQDNNFVTSVVGEGMIFLSNIDGPQTLKVSLPDSQSCLLQVNPEQEPD
DDQLYETAPVVCHVR