Protein Info for PFLU_RS28295 in Pseudomonas fluorescens SBW25-INTG

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1939 PF01627: Hpt" amino acids 10 to 98 (89 residues), 32.1 bits, see alignment 2.2e-11 amino acids 619 to 705 (87 residues), 49.2 bits, see alignment (E = 1e-16) amino acids 750 to 834 (85 residues), 42 bits, see alignment (E = 1.9e-14) amino acids 1049 to 1149 (101 residues), 45.9 bits, see alignment 1.1e-15 amino acids 1187 to 1285 (99 residues), 54.8 bits, see alignment 1.9e-18 PF02518: HATPase_c" amino acids 1518 to 1654 (137 residues), 56.2 bits, see alignment 9.2e-19 PF01584: CheW" amino acids 1660 to 1792 (133 residues), 73.6 bits, see alignment 2.5e-24 PF00072: Response_reg" amino acids 1820 to 1931 (112 residues), 97.7 bits, see alignment 9.5e-32

Best Hits

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K3J2 at UniProt or InterPro

Protein Sequence (1939 amino acids)

>PFLU_RS28295 response regulator (Pseudomonas fluorescens SBW25-INTG)
MVDRHDYVALEWVKGDIAETLQQARSALDAYVETTDGDAISECLAGIHQVHGALQMVEFY
GAALLAEEIEALALALQAGHVSQRDESIRLLQQALNQLPLYLDRVHSARRDLPLVVLPLL
NDLRSARGESLLSETSLFSPQLLTIAPLPDEALAQRAVPDLKEQLRQWHQLLQQALAGLL
REDHGPSNLEDMARVFARLETLCQGAPLLPLWQVTSALVEGMLIGVIANSPALRSLLKAS
DKQLKRLLAQGIGGINQPAPDELLKSLLFYVAKVTRPTPRMQSLKERYGLDEALPDSTVV
DAERARLAGPDRNAMGSVLGALCEELVRVKERLDLFVRSDRQHTSDLDALLAPLRQIADT
LAVLGFGQPRKVIIDQLAVVLSLAQGQREPNDAVLMDVAGALLYVEATLAGMAGTVEPES
REESRLPTTDQTQIHQLVIRESCQCLKQAKELVIDCIEADWDRQRLESLPELLSQVRGAL
AMIPLPRAASLMRGCTDYVDEQLMGNDAPPTERQLAHFADVISSLEYYLERMLQDPDAAG
ERVLELATQGLAALGYLPAEKPWRQALVAPDGALAVEVAPSQSQFDALASPTSRLNPPAL
QRPGSLLPPPADEEPIDDELREVFLEETDEVLDVLHRYLPNSADKTAQGEMRRAFHTLKG
SGRMVRALVLAELAWAVENLLNRVLERSVALSPEVQQVLDEAVALLPELIADFATDDQRQ
RDEVDALAARAHALASGTPQPSAEPHDPMLLEIFRNEVQSHLDSLNHFLQQAAEHVPLHV
SDELQRALHTLKGSAYMAGVLPIAELARPLDHLTREYKAHRLPLDLDEVELLLEAESLFQ
RGLRDLDSDPLAPIKGAEDLINRTQRLLDQQLEALLDAPNTGLRIKRDPQLIANFLAQGM
DILLDAESLLRRWQQHPGERQELTALLDELTTLGEGAHVADLHAIDALCEALLDLYGAVE
ESSLAVSERFFHEAEQAHEALINMLDQLAAGQEISPAPARVQALRELLDEALDPSATGLI
KSDGSRALSISELGAATAQLDQPTAMDDEIVEIFLEEAVDILDSAGQSLKRWLLEPDNAG
PLSSLQRDLHTLKGGARMAEIGPVGDLAHELECLYEGLVDRRYSYSPELSLLLMASHERL
ALQLDELQQQRPLSDAGELIAQLRGFRQGSTPTAPTEAAQASGADPELLDIFLEEAADIL
DSSGSALLRWQAEPGSRQEVETLLRDLHTLKGGARMVEIGPIGDLAHELEFLYEGLSAGL
LAPSAELFALLQGCHDRLAQMIDAVADGLPVGSVDKLIERIKSLVHPSDEPVTPVALPTG
KAEAVVDPAADMVKISAELLDDLVNLAGETSIFRGRIEQQVNDARIALTEVETTIERMRD
QLRRLDTETQGRILSRQQAEAERLGYEEFDPLEMDRHSQLQQLSRALSESASDLLDLKDT
LERRNEDAHDLLQQQARINTELQEGLMRTRMVPFERMLPRLKRIVRQVAGELGKDVEFIV
GNAEGEMDRNVLERMAAPLEHMLRNAVDHGLESRDVRLLAGKPEKGRITLDLTHEGGDIV
FDMRDDGAGVPLEAVRRKAIKRGLLGPHQEISDRDVLQFILQPGFSTAEKITQISGRGVG
MDVVHEEVRQLGGSMVIDSTPGEGVHFRIRLPFTVSVNRALMVQCADDQYAIPLNTIEGL
VRVLPHELAGHYQQDPPCYEYAGQRYELFYLGDLLHTVSRPKLLGQYQPVPVLLVQCNER
RVAIHVDAMAGTREIVVKGLGPQFAGVQGLSGATILGDGRVVLIIDLLAHIRARQPALPA
QSVDAPLILNDPLKKRPLLVLVVDDSVTVRKVTSRLLERNGMNVLTAKDGIDALAVLEEH
TPDLMLLDIEMPRMDGFEVATQVRNDPRLMRLPIIMITSRTGQKHRDRAMAIGVNDYLGK
PYQESVLLESIAYWSKSHA