Protein Info for PFLU_RS25595 in Pseudomonas fluorescens SBW25-INTG

Annotation: exodeoxyribonuclease V subunit gamma

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1149 TIGR01450: exodeoxyribonuclease V, gamma subunit" amino acids 11 to 1094 (1084 residues), 1199.7 bits, see alignment E=0 PF04257: Exonuc_V_gamma" amino acids 11 to 366 (356 residues), 333.1 bits, see alignment E=1.7e-103 PF17946: RecC_C" amino acids 839 to 1077 (239 residues), 174.4 bits, see alignment E=2.7e-55

Best Hits

KEGG orthology group: K03583, exodeoxyribonuclease V gamma subunit [EC: 3.1.11.5] (inferred from 100% identity to pfs:PFLU5214)

Predicted SEED Role

"Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K221 at UniProt or InterPro

Protein Sequence (1149 amino acids)

>PFLU_RS25595 exodeoxyribonuclease V subunit gamma (Pseudomonas fluorescens SBW25-INTG)
MPDATSLSAGFMVVHGNRLDELRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPEDDDMGGCGIAAAIDVQLPGSFMWQLYRMVLGRDEIPPKSLLDKAPLTWRLMRLLPEL
IDQPHFEPLQRFLTHDTDLRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRNGRGE
SKPLNLANCWQAELWRALLLDVGEEGMAESRAGVHQRFIERINTLEHAPPGLPSRVIVFG
ISSLPAQALEALAGLARFSQVLLCVHNPCRHHWSDIVADKDLLRNEYKRQARKSGMPVTI
DPQTLHQHAHPLLAAWGKQGRDYISLLDSYDDPNSYRAAFRDGRIDLFSDSEPTTLLNQL
QDDILELRPLNETRELWPAVDLDRDTSIRFHIAHSAQREVEILHDQLLQRFSADPALRPR
DIIVMVPDVDSYAPHIRAVFGQLERNDPRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRERFAIKERDLPTLHRWIEGAGIRWGLNAEQRAGLGLPTELEQNS
WRFGLRRMLLGYAVGTGAACDGIEPYDEIGGLDAALIGPLVALLDALNDAHQALSQPAPP
RVWGERLQRLMQLFFLPSSEHDDYLLGQLEQLRETWLETCESVGLQDELPLTVVREAWLA
GLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEALLSARDQLYISWVGRSIRDNSDRPASVLIGQLRDHLASGWHHAN
SDEPLIDAMTQEHPLQPFSARYFHEGDALFSYAREWQLLHEASDALPTEHDLAPHQQEEP
LSLGQLQDFLRNPVKHFFSQRLKVFFEAAEVPLADEEPFVLDALQRYSLSDSLLSAALTQ
PDHLDQALNAQALRLQGSGLLPMVGFGECLRNELIEPLPDLLRRYQQLLALWPTPHPGAE
PVSFEHHGVQLEGWISGLHRRSDGGLLSVTTIPNSIGSIKTRKWHRLIRPWVNHVVACAC
GLPLSTGLVASDDTLLLPPLDTSNAREILCNLLLAWHTGMSKPLPVAVKTAFAWLSQTDP
VKAEAAASKTYEGDGLTNHGERRETPALTRRFPDYATLIASEEFEGWCETLYRPLLNAPW
RSLTGEDGA