Protein Info for PFLU_RS25510 in Pseudomonas fluorescens SBW25-INTG

Annotation: amino acid permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 47 to 66 (20 residues), see Phobius details amino acids 87 to 106 (20 residues), see Phobius details amino acids 125 to 142 (18 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details amino acids 199 to 220 (22 residues), see Phobius details amino acids 241 to 261 (21 residues), see Phobius details amino acids 293 to 312 (20 residues), see Phobius details amino acids 342 to 363 (22 residues), see Phobius details amino acids 369 to 388 (20 residues), see Phobius details amino acids 409 to 432 (24 residues), see Phobius details amino acids 438 to 455 (18 residues), see Phobius details PF00324: AA_permease" amino acids 19 to 462 (444 residues), 425.5 bits, see alignment E=2.5e-131 PF13520: AA_permease_2" amino acids 23 to 448 (426 residues), 129.3 bits, see alignment E=2e-41

Best Hits

KEGG orthology group: K03293, amino acid transporter, AAT family (inferred from 100% identity to pfs:PFLU5197)

Predicted SEED Role

"Aromatic amino acid transport protein AroP" in subsystem Aromatic amino acid degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K205 at UniProt or InterPro

Protein Sequence (467 amino acids)

>PFLU_RS25510 amino acid permease (Pseudomonas fluorescens SBW25-INTG)
MADDMVNPVGLKRGLKNRHIQLIALGGAIGTGLFLGSAGVLKSAGPSMILGYAIAGFIAF
LIMRQLGEMIVEEPVAGSFSHFAHKYWGGYAGFLAGWNYWVLYVLVGMAELTAVGKYIQF
WWPEIPTWVSALVFFVAVNLINTLNVKFFGEAEFWFAIIKVVAIVGMIALGCYLLFSGTG
GPQASVSNLWSHGGFFPNGGMGLLMSMAFIMFSFGGLELVGITAAEASEPRKVIPKAINQ
VVYRILIFYVGALTVLLSLYPWDQLLQTLGASGDAYSGSPFVQIFSLIGNDTAAHILNFV
VLTAALSVYNSGVYCNSRMLFGLAEQGDAPKALMKLNKQGVPLRALAISALVTMLCVVVN
YVAPQSALELLFALVVASLMINWALISITHIKFRKAMGEQGVTPSFKTFWFPFSNYLCLA
FMLMIISVMLAIPGIRESVYAMPVWVGIIYVAYRLRVRRSNAVVNTQ