Protein Info for PFLU_RS25260 in Pseudomonas fluorescens SBW25-INTG

Annotation: DUF1302 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 596 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF06980: DUF1302" amino acids 13 to 596 (584 residues), 568.7 bits, see alignment E=8.5e-175

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU5148)

Predicted SEED Role

"FIG067310: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K1V5 at UniProt or InterPro

Protein Sequence (596 amino acids)

>PFLU_RS25260 DUF1302 domain-containing protein (Pseudomonas fluorescens SBW25-INTG)
MTKTTMRAIFKPQALAAAVALGCCAQAQAVSFNIGEIEGQFDSSLSVGASWGMRDADKKL
VGTVNGGTGQASTGDDGRLNFKKGETFSKIFKGLHDLELKYGDTGVFVRGKYWYDFELQD
EDREFKPISNHNRKEGAKSSGAQILDAFVYHNYSLGDLPGTVRVGKQVVSWGESTFIGNS
INSINPIDVSAFRRPGAEIKEGLIPVNMLFASQSLTNQLTLEGFYQLEWDQTVLDNCGTF
FGGDVAADGCTNNYTVGNPAIRPLQPVAAAFGQGFGVTNEGVIVRRAGDRDARDSGQFGT
ALRWLGDDTEYGLYFMNYHSRTPTVGTITNNTSLATLGAISGAANGIAPGSGAGLVQSLM
LGRGQYYLDYPEDIRLFGASFSTTLPTGTAWTGEISYRPNAPVQLNTTDLTLALINPVAG
QAASPIRSNFGDDNKGYRRKEITQIQSTMTQFFDQVLGAERLTLVGEAAVVHVAGLEDKS
KLRYGRDSVYGAYGFQGDTDGFVTSTSWGYRARAILDYNNAIAGVNLKPNLSWSHDVAGY
GPNGLFNKGAKAISVGVDADYRNTYTASLSYTDFFGGDYNTLTDRDFLALSFGVNF