Protein Info for PFLU_RS24375 in Pseudomonas fluorescens SBW25-INTG

Annotation: c-type cytochrome

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF06537: DHOR" amino acids 33 to 475 (443 residues), 400.7 bits, see alignment E=9.7e-124 PF00034: Cytochrom_C" amino acids 347 to 475 (129 residues), 24.7 bits, see alignment E=4.8e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU4973)

Predicted SEED Role

"Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K186 at UniProt or InterPro

Protein Sequence (475 amino acids)

>PFLU_RS24375 c-type cytochrome (Pseudomonas fluorescens SBW25-INTG)
MFRSLFRLSAGLLALSLTACDDAPRFTKAEPGESRAGGAATVNKRDQNAFSLPSANLSPT
RRLDFSVGNSFFRSPWVIAPSTTTARDGLGPLFNTNACQNCHIKDGRGHPPLPDAPNAVS
MLVRLSIPDAAPYATLIEQIGVVPEPVYGGQLQDMAVPGVVPEGKVRMDYTPVNVTFKDG
TVVELRKPDLQITQLGYGPMHPDTRFSARIAPPMIGLGLLEAISDADILRNTDPKTADKE
AIVGRANWVWDDAQQKTVLGRFGWKAGQPNLNQQNVHAFSGDMGLTTSLRPFDDCTDAQV
ACKQAPNGNGPDGEPEVSDNILRLVLFYTRNLAVPARRGVNTPQVLAGKNLFYQAGCQGC
HTPAFTTAANAAEPELANQVIRPYSDLLLHDMGPGLADNRSEFKAGGHDWRTPPLWGIGL
TQTVSGHTQFLHDGRARNLLEAVLWHGGEAQAAQQHVLSFNAEQRAALLAFLNSL