Protein Info for PFLU_RS24125 in Pseudomonas fluorescens SBW25-INTG

Annotation: cold-shock protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 35 to 55 (21 residues), see Phobius details amino acids 66 to 85 (20 residues), see Phobius details amino acids 93 to 115 (23 residues), see Phobius details PF00313: CSD" amino acids 133 to 194 (62 residues), 88.8 bits, see alignment E=8.4e-30

Best Hits

KEGG orthology group: K03704, cold shock protein (beta-ribbon, CspA family) (inferred from 85% identity to pfo:Pfl01_4415)

Predicted SEED Role

"Cold shock protein CspC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (200 amino acids)

>PFLU_RS24125 cold-shock protein (Pseudomonas fluorescens SBW25-INTG)
MLKIVHLLTGVAALLLSFIPSLQQGSPPYLEQHDALYLALFGLLNLTLAPVIPYWNKGTR
HQLQNLVSALLVLTVVVQTLTLLAPMPEVGGHPAILLSLVIAVVAIVLHLAISFYRSSPA
ASSQTYDMTNRDTGTVKWFNTSKGFGFISRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS
VMNRDKGLQAEDVIAALPRR