Protein Info for PFLU_RS19345 in Pseudomonas fluorescens SBW25-INTG

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 541 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 189 to 209 (21 residues), see Phobius details PF02203: TarH" amino acids 3 to 126 (124 residues), 26.5 bits, see alignment E=1.1e-09 PF12729: 4HB_MCP_1" amino acids 13 to 178 (166 residues), 64.8 bits, see alignment E=1.6e-21 PF00672: HAMP" amino acids 208 to 258 (51 residues), 34.6 bits, see alignment 4e-12 PF00015: MCPsignal" amino acids 323 to 505 (183 residues), 137 bits, see alignment E=1.2e-43

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 100% identity to pfs:PFLU3962)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JYV7 at UniProt or InterPro

Protein Sequence (541 amino acids)

>PFLU_RS19345 methyl-accepting chemotaxis protein (Pseudomonas fluorescens SBW25-INTG)
MFMRALKLNFRTTLCFGVVCLLLLVQGAMTLIKVDKVYSSTVEIENNWLPSIRLAGEIDS
AFYKLRLDLRRYAMETTRQDPASLEKLKATRTEVLDIAERYVPFVSSPEEQSTYNGALAS
IKNYSQKMDEFLAQASSLSVEQMSTYLRDVNGPIALDVQRAIRELIALNEKGSKAAVQVA
SGEYETARLFTWILMVGSLLITVVVARLFTRSIIAPVRELLVSTGKIADGDLRVAIAING
NDELTALQRSTASMQMNLKSTLQHISEASGQLASAAEEMSAITRESSAGIERQSLETDQA
ATAVNEMTAAVEEVARNAVSASQSTQDSQRSAKMGQERVTQTIASIEKLSATVQQTGVEV
EGLAKQAQDIARVVEVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQ
TSTQEIEQMIAKIQSCSSEAVSSMALNRNEAVDSLKIAHEAGLAITQITEAITDINERNL
LIATASEEQAHVARSVDQNLISIRDLSIQSSSAAGQTSIASQELSRLAVDLKQIVSKFSV
A