Protein Info for PFLU_RS19140 in Pseudomonas fluorescens SBW25-INTG

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 54 to 77 (24 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 144 to 166 (23 residues), see Phobius details amino acids 172 to 191 (20 residues), see Phobius details amino acids 214 to 238 (25 residues), see Phobius details amino acids 254 to 273 (20 residues), see Phobius details amino acids 280 to 299 (20 residues), see Phobius details amino acids 305 to 325 (21 residues), see Phobius details amino acids 341 to 362 (22 residues), see Phobius details amino acids 368 to 388 (21 residues), see Phobius details PF07690: MFS_1" amino acids 24 to 333 (310 residues), 129.6 bits, see alignment E=7e-42

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3923)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JYJ4 at UniProt or InterPro

Protein Sequence (401 amino acids)

>PFLU_RS19140 MFS transporter (Pseudomonas fluorescens SBW25-INTG)
MTSLTDSPVTTRPETLPMAGLLALASAGFITILTEAMPAGLLPQMGEGLGVSPALVGQLV
TLYALGSLLAAIPLTLLTRGWRRRPLLLVAIGGFALVNSVTALSSHYGLTLVARFFAGVF
AGLLWALLAGYASRMVAPHLQGRAIAVAMLGAPLALSLGVPAGTFLGAAVGWRLSFAIMT
GLTLVLLIWARWQLPDFAGERAEKRLGLHQVLTLPGIRPVLWVTFTYVLAHNILYTYIAP
LLVPAGIVTDIDRVLLVFGLAALLSIWLAGVLIDRWLRALLLISCALFGLIALALAFWID
LPAVIYVTVALWGLAFGGLPALLQTALAKSAGESADAAQSMLVTVWNLGIAGGGLAGGVL
LQGWGVGAFPWVVVLLMLLAITGALQAAPQQVARPSLQVER