Protein Info for PFLU_RS18000 in Pseudomonas fluorescens SBW25-INTG

Annotation: AhpC/TSA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 227 transmembrane" amino acids 75 to 95 (21 residues), see Phobius details PF08534: Redoxin" amino acids 46 to 198 (153 residues), 37.5 bits, see alignment E=2.1e-13 PF00578: AhpC-TSA" amino acids 47 to 194 (148 residues), 57.4 bits, see alignment E=1.5e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3691)

Predicted SEED Role

"Peroxiredoxin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3JXR9 at UniProt or InterPro

Protein Sequence (227 amino acids)

>PFLU_RS18000 AhpC/TSA family protein (Pseudomonas fluorescens SBW25-INTG)
MSESLNRQLADLHAERVATWAPEALQVNIDQRQRLVDEARPDDYVQVGDELAPFTLLTVE
GGELNRDLLLADGPAVLIFFRFAGCPACNIALPYYERQLYPRLRELGVPLVAVSPQVPER
LVEIKTRHTLQLQVASDPDNTLGRRLGILYSADEASRNAALAKGNHLGETTGTGTWELPQ
PTVVVIAGDGTVAFVEVSPDWLVRTEAEPVLQAVERLLGEQPVRIAI