Protein Info for PFLU_RS16435 in Pseudomonas fluorescens SBW25-INTG

Annotation: glycogen debranching protein GlgX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 719 TIGR02100: glycogen debranching enzyme GlgX" amino acids 21 to 712 (692 residues), 1089.4 bits, see alignment E=0 PF02922: CBM_48" amino acids 25 to 113 (89 residues), 57.6 bits, see alignment E=1.2e-19 PF00128: Alpha-amylase" amino acids 207 to 293 (87 residues), 32.7 bits, see alignment E=6.1e-12

Best Hits

KEGG orthology group: K02438, glycogen operon protein GlgX [EC: 3.2.1.-] (inferred from 100% identity to pfs:PFLU3369)

Predicted SEED Role

"Glycogen debranching enzyme (EC 3.2.1.-)" in subsystem Glycogen metabolism or Trehalose Biosynthesis (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KD21 at UniProt or InterPro

Protein Sequence (719 amino acids)

>PFLU_RS16435 glycogen debranching protein GlgX (Pseudomonas fluorescens SBW25-INTG)
MSKPDKTPPTPDNEPSRIREGLPFPLGATWDGLGVNFALFSANATKVELCLFDDSGEVEL
ERIELPEYTDETFHGYLPDAHPGLIYGYRVYGAYDPANGHRFNHNKLLIDPYAKQLVGEL
KWSEALFGYTIGHPDDDLSFDERDSAPFVPKCKVIDPAHTWGNDQPVRVPWDRTIIYETH
LRGISMRHPSVGESVRGTCAGLMEDDVLKHIRQLGISSVELLPVHAFVNDQHLLEKGMTN
YWGYNSIAFFAPDPRYLASGKIAEFKEMVAHLHEAKLEVILDVVYNHTAEGNERGPTLSM
RGIDNASYYRLMPDDKRFYINDSGTGNTLDLSHPCVLQMVTDSLRYWATEMHVDGFRFDL
ATILGRYRDGFDERHSFLVACRQDPVLRQLKMIAEPWDCGPGGYQVGNFPPGWVEWNDRF
RDTVRAFWKGDDSQLADFAARMTASGEMFNHRGRRPYSSVNFITAHDGFTLHDLVSYNDK
HNEANDENNQDGSNNNLSWNHGVEGPTDDPEINALRLRQMRNFFATLLLSQGTPMLVAGD
EFARTQHGNNNAYCQDSEIGWINWDLDEDGKALLKFVKRLIKLRLAYPILRRGRFLVGDY
NEDIGVKDVTWLAPDGNEMTTEQWQDSNGRCLGMLMDGRAQETGIRRPGADATLLLVVNA
HHDMVNFRLPSVPQGEFWTCMLDTNEPAVRGQERFDFDHEYAVTGRSLLLFELQRDDEV