Protein Info for PFLU_RS15760 in Pseudomonas fluorescens SBW25-INTG

Annotation: general secretion pathway protein GspL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 transmembrane" amino acids 230 to 253 (24 residues), see Phobius details PF05134: T2SSL" amino acids 33 to 176 (144 residues), 28.7 bits, see alignment E=8.4e-11 PF12693: GspL_C" amino acids 229 to 349 (121 residues), 54.7 bits, see alignment E=1.2e-18

Best Hits

KEGG orthology group: K02461, general secretion pathway protein L (inferred from 100% identity to pfs:PFLU3234)

Predicted SEED Role

"General secretion pathway protein L"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KC64 at UniProt or InterPro

Protein Sequence (390 amino acids)

>PFLU_RS15760 general secretion pathway protein GspL (Pseudomonas fluorescens SBW25-INTG)
MSVRIALPPLNSLTPDTELAFARLDRNGRVSQTGVSTLALLGQTAQSQSVECFLHPMDSV
LTQLQLPPLSAAKTQAAVMCAAQALILGRIEQMHIAHSPGDADGHVFLSWLPTSVLERFG
EVLSQHRLKLRGLYPAPYGLPVPPAGHISACVLEGHLLLRHSLEQGVIEPQVQASLDALA
ASGSRLAWFGDDTPAAVIEPQPAQQRWSAALPTWGLHGGVGKAPGSQAGWGRALACCALA
IGVWLLGLNLYAAREASEGQQLKMQMSQRVKQAFPELPVILNPLQQARQQLSARQNPANS
DAPQRFAGLMLQAADAMPFMVGNVQGLVFEQAELHVSLTADARRNTPDNAWQATLAQAGV
AAQATPTGWRLRPADAESREPDSGAASDNE