Protein Info for PFLU_RS15090 in Pseudomonas fluorescens SBW25-INTG

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 497 transmembrane" amino acids 7 to 30 (24 residues), see Phobius details amino acids 46 to 66 (21 residues), see Phobius details amino acids 75 to 94 (20 residues), see Phobius details amino acids 104 to 125 (22 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 161 to 184 (24 residues), see Phobius details amino acids 196 to 214 (19 residues), see Phobius details amino acids 226 to 242 (17 residues), see Phobius details amino acids 263 to 284 (22 residues), see Phobius details amino acids 299 to 321 (23 residues), see Phobius details amino acids 329 to 347 (19 residues), see Phobius details amino acids 353 to 379 (27 residues), see Phobius details amino acids 399 to 421 (23 residues), see Phobius details amino acids 466 to 486 (21 residues), see Phobius details PF07690: MFS_1" amino acids 15 to 404 (390 residues), 146.2 bits, see alignment E=5.9e-47

Best Hits

KEGG orthology group: K08167, MFS transporter, DHA2 family, methyl viologen resistance protein SmvA (inferred from 100% identity to pfs:PFLU3093)

Predicted SEED Role

"Antiseptic resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KBA3 at UniProt or InterPro

Protein Sequence (497 amino acids)

>PFLU_RS15090 MFS transporter (Pseudomonas fluorescens SBW25-INTG)
MTVPRRWLILAIISSALLLIVIDMTVLYTALPTLTRELNASASEKLWIVNIYALIAAGLL
LGMGTLGDRLGHKHLFIGGLSVFGLFSLIAAFSPSAAVLIGARGFLAVGAAMMMPATLAI
VRVTFIDPREQAMAFGIWASVASGGAAFGPVVGGLLLEHFWWGSVFLINVPIVLVALVVG
ALLIPNHPGDMSKRWDWLGSLQVMIGLISVAYAVKELGKRAPSFEGMLIALVLGALFLTL
FVRRQRRATQPMLDVALFKVTGFRNAVISAVVSAAALIGMELVFSQRLQLVLGLSPLEAA
LFILPLPLGSFISGPLAGYYLPRLGNQRMLFWTLLLSAASMLAYLLLYDAAVYLQLIVLA
LLGFTIGAALTASSSTIMLSVPANQAGMAASIEEVSFELGGAVGVTLAGSLLSAIYAYSA
GVVIPSWLTRNPATFDSLDDALVVAETLSPEGAAMLRAFARSAFDTGFVAVLAASAALLL
IAALLVKLSRQTPPATP