Protein Info for PFLU_RS15080 in Pseudomonas fluorescens SBW25-INTG

Annotation: APC family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 482 transmembrane" amino acids 20 to 45 (26 residues), see Phobius details amino acids 52 to 72 (21 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 131 to 153 (23 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details amino acids 204 to 226 (23 residues), see Phobius details amino acids 238 to 261 (24 residues), see Phobius details amino acids 296 to 317 (22 residues), see Phobius details amino acids 346 to 364 (19 residues), see Phobius details amino acids 375 to 399 (25 residues), see Phobius details amino acids 413 to 433 (21 residues), see Phobius details amino acids 443 to 464 (22 residues), see Phobius details PF13520: AA_permease_2" amino acids 25 to 435 (411 residues), 78.7 bits, see alignment E=4.6e-26 PF00324: AA_permease" amino acids 43 to 463 (421 residues), 73.8 bits, see alignment E=1.2e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3091)

Predicted SEED Role

"Amino acid transporters"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KBA1 at UniProt or InterPro

Protein Sequence (482 amino acids)

>PFLU_RS15080 APC family permease (Pseudomonas fluorescens SBW25-INTG)
MSVSIPVNSSTELKRGALGVGFIIFFVISAASPLSVIAGGFPIGIMLGNGAGTPALLILA
LLVLLAFSVGYTTMSRHVTNAGGFYAFTSRGLGGLAGGAAGVLAMFAYNILQVGLYGMFG
GVVSGTMEAAFGLVLPWWSYSLMAMASIAILGYRKIDLSARVLSVVVIAEYLAILVLDFA
ILKSGGDSGINLDSFSSSHVFSGTPSIGLLFCFAAFIGFEATTIYGEEAKNPKRSIPIAT
YCSVLLIGGFYALSVWSMVVGVGADKIVPLLQSLQDPTTFIYGMSDHFVGPQLTQIIRVL
FMVSIYAGLLAFHNAAARYFYAIGRDGLLHSLLGTTHRVHQSPHMGSALQSLIAAVVVLI
FAAMDADPILQLFAWLSNLATLCVILLMALTSVAVCAYFHRHPELKVGMLRGRILPGISC
LALVMVLVLAVVHFDVLTGASQLLSYSLCAIIPAALIIGIVLAARLRKSSPQRFLALGSH
KL