Protein Info for PFLU_RS12740 in Pseudomonas fluorescens SBW25-INTG

Annotation: BcpO-related WXXGXW repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 103 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF12779: WXXGXW" amino acids 49 to 73 (25 residues), 34.7 bits, see alignment 8.1e-13 amino acids 82 to 101 (20 residues), 13.8 bits, see alignment 2.6e-06

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2608)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K9L6 at UniProt or InterPro

Protein Sequence (103 amino acids)

>PFLU_RS12740 BcpO-related WXXGXW repeat protein (Pseudomonas fluorescens SBW25-INTG)
MRPLAKLRFALLAPLALAACISTPVFAQTEIIIRQAPPPARVEAIPVERPGYAWDRGHWR
WEGRGYAWVPGHWQPVMRNARWEPGHWEAHGPNWYWREGHWIR