Protein Info for PFLU_RS12235 in Pseudomonas fluorescens SBW25-INTG

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 transmembrane" amino acids 37 to 57 (21 residues), see Phobius details amino acids 63 to 81 (19 residues), see Phobius details amino acids 86 to 106 (21 residues), see Phobius details amino acids 115 to 136 (22 residues), see Phobius details PF04632: FUSC" amino acids 27 to 205 (179 residues), 110 bits, see alignment E=6.8e-36

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2502)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K8R8 at UniProt or InterPro

Protein Sequence (222 amino acids)

>PFLU_RS12235 hypothetical protein (Pseudomonas fluorescens SBW25-INTG)
MDSVRRTSRTHHDDRATCLALPGILLTPSATRGNRQVTGGALIAIPVAILFVLSSLAQGS
GDFEMLILVLSAPLFLGLMSMTSPTLAPYGLGFCLTLAVLVQPSNYMTFAVDQCLSTGLG
IAAGLGLLYAGFDLLGPPKATWLQRRIIRALNSDLEKMRKKRLSVNWLTQRAAERLAFLA
AYEPPSPVGRKLTQRGLKVFESGHRMTVNSIKQHQASNSTLQ