Protein Info for PFLU_RS12035 in Pseudomonas fluorescens SBW25-INTG

Annotation: DUF726 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 transmembrane" amino acids 82 to 103 (22 residues), see Phobius details amino acids 438 to 458 (21 residues), see Phobius details amino acids 463 to 480 (18 residues), see Phobius details PF05277: DUF726" amino acids 124 to 207 (84 residues), 36.5 bits, see alignment E=1.5e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2456)

Predicted SEED Role

"FIG00968225: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K8M7 at UniProt or InterPro

Protein Sequence (517 amino acids)

>PFLU_RS12035 DUF726 domain-containing protein (Pseudomonas fluorescens SBW25-INTG)
MQHQWDEMHRTRKPTFLLCGEPQGDVLNLYVHGYSAFFNRQQLGSFKAQLAGIEGSTNLM
LFWPAGHFLENLFAPFKDVMGAMLGGGSLGAATVGVGKAIAYFLDHYKSVEARVDEVARS
LLPELANYLHGESLAVRRINLIGHSLGARILVKSLLANPEAARELPLDNLLLMGGAICTS
SPWDDVSAPLKGRVINCHSSKDWALALKPDTERCIGRYAIPVTPALKAKVTNVHLATFDH
AAYWPQLQTVVQYTDLLHERRGMIRSDQRSPEVRFAEEDAELFPALVQARPEELKFLAEL
MAQKRSASIDGNVREPLKLAIELQRMGGDSFMNMARGHGVSYRQIAEDVVQRLGIKFDES
LDTVELAALEARVAEKLIEQYKDKLSNADRQVFDAELKAAAQKEQGLFSRFDVGRSATTA
LSGTALAGLTGFILRRGAATAIPVVGQALAAAMLLVSGVRAFSGPAYSITTLAVLVIGVI
RQRMEREALNQEMDLVVQVVETFDLPRETVMRTVASD