Protein Info for PFLU_RS11795 in Pseudomonas fluorescens SBW25-INTG

Annotation: YbfB/YjiJ family MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 52 to 72 (21 residues), see Phobius details amino acids 85 to 108 (24 residues), see Phobius details amino acids 113 to 132 (20 residues), see Phobius details amino acids 139 to 160 (22 residues), see Phobius details amino acids 170 to 189 (20 residues), see Phobius details amino acids 210 to 233 (24 residues), see Phobius details amino acids 248 to 268 (21 residues), see Phobius details amino acids 276 to 295 (20 residues), see Phobius details amino acids 301 to 321 (21 residues), see Phobius details amino acids 340 to 359 (20 residues), see Phobius details amino acids 366 to 387 (22 residues), see Phobius details PF07690: MFS_1" amino acids 21 to 218 (198 residues), 41.8 bits, see alignment E=7e-15 PF06779: MFS_4" amino acids 24 to 383 (360 residues), 250.3 bits, see alignment E=4.1e-78

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2404)

Predicted SEED Role

"Nitrite extrusion protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K999 at UniProt or InterPro

Protein Sequence (410 amino acids)

>PFLU_RS11795 YbfB/YjiJ family MFS transporter (Pseudomonas fluorescens SBW25-INTG)
MLDTPTPPRRSVWLPIFAGLCASLVSIGLARFAYTPLIPTLIQAQWFSASDVVYLGAANL
VGYLIGALIGRPIAQRTSNKTALRTMMVAVTLAFFACGFPLSVVWFFAWRLLSGIAGGAI
MVLVAATVLPHVPAARRGLASGAIFLGIGLGIAGSGTLVPPLLSLGLQQTWFGLGLLALV
LTAASWFAWPTGTLQEAAAPTDTSARTPSGVYLLFAQYAFMAAGLVPAMVFLVDYVARGL
GDGAHVGAMIWVMYGLGAIVGPVTYGFLADKLGARLSIRVVLVVQAIAVGLLPFAGSFSA
LAVLAVILGSFPPGIVPLALARVHELLPNHHQQQVAWSRATVSFATFQALSGFAYSALFN
SSGGQHALLFMIAAGAIVVALALELGMIMLNRRPLGTVPTHTLIAAGTLK