Protein Info for PFLU_RS11635 in Pseudomonas fluorescens SBW25-INTG
Annotation: hypothetical protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.
Best Hits
KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2369)MetaCyc: 70% identical to 2-keto-3-deoxy-L-lyxonate dehydratase (Pseudomonas aeruginosa PAO1)
2-dehydro-3-deoxy-L-arabinonate dehydratase. [EC: 4.2.1.43]
Predicted SEED Role
"SUGAR TRANSPORTER"
MetaCyc Pathways
- L-arabinose degradation III (5/6 steps found)
- L-lyxonate degradation (2/3 steps found)
- superpathway of pentose and pentitol degradation (16/42 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 4.2.1.43
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See C3K967 at UniProt or InterPro
Protein Sequence (329 amino acids)
>PFLU_RS11635 hypothetical protein (Pseudomonas fluorescens SBW25-INTG) MRLVQFELHNGERRVGVVEGSTLREVNTARSVRELALAAIEAGIKLQQQVETLGLGDSHD YAALLADLRVLPPLDHPDPAHMLISGTGLTHLGSASARDKMHQAGDDTALTDTMRIFKWG VEGGKPAAGQAGVQPEWFYKGDGSIVVRPGEAFPVPPFAEDAGEEPEIGGLYVIGPDSKP YRLGFAVGNEFSDHIMERKNYLYLAHSKLRSCSYGPELRVGELPQHLAGTSRILRNGEEI WRNEFLSGEANMCHSLENLEYHHFKYRQFLKPGDVHIHFFGTATLSFADGIRTQPGDVFE ISQAEFGAPLVNRVGSADAAFEPGNVITL