Protein Info for PFLU_RS10325 in Pseudomonas fluorescens SBW25-INTG

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 51 to 72 (22 residues), see Phobius details amino acids 82 to 99 (18 residues), see Phobius details amino acids 105 to 130 (26 residues), see Phobius details amino acids 142 to 166 (25 residues), see Phobius details amino acids 172 to 192 (21 residues), see Phobius details amino acids 222 to 240 (19 residues), see Phobius details amino acids 259 to 280 (22 residues), see Phobius details amino acids 287 to 306 (20 residues), see Phobius details amino acids 312 to 334 (23 residues), see Phobius details amino acids 346 to 365 (20 residues), see Phobius details amino acids 377 to 396 (20 residues), see Phobius details PF07690: MFS_1" amino acids 24 to 299 (276 residues), 104 bits, see alignment E=8.4e-34 amino acids 226 to 403 (178 residues), 65.5 bits, see alignment E=4.1e-22 PF06779: MFS_4" amino acids 28 to 392 (365 residues), 87.3 bits, see alignment E=1.4e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2096)

Predicted SEED Role

"Transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K5R4 at UniProt or InterPro

Protein Sequence (409 amino acids)

>PFLU_RS10325 MFS transporter (Pseudomonas fluorescens SBW25-INTG)
MSTLVQSNARPLDSVVLAVVLTGFVASTYGFGVYLFANLVVDMRRDIGFDYTTVGLITGG
AQIGFLLFSSVTSVISRYFEGWKISLVSTVMTSLALLGLSVSDSIWLSGALLILLGGCSA
SVYIPLAEIVTKGFSPGNRSRVMGLISSGTSYGVFINGLLVSFLTLNGGWRSIWLTAGLI
SVALCVVAWFLLRNLAASQDRGFAGERATAFDSRQPWLSRSLYLTWAIAFLNGMALLPFQ
TYLAPFLRDELGVSVQDAGFIWTTIGAVGMASGFLVGWIADKVGVRASLAMCFLSAGLAA
TLVFSFNSLPLFYLAAFLFALAFYPIFGLVPSYIGQIVPVSRLTQAFGIANVLIGLGGVC
GNFLGGFSKDLTGSFSTVYWVVALLLFVQCVMVFMLGKQPVSVTEGERP