Protein Info for PFLU_RS09725 in Pseudomonas fluorescens SBW25-INTG

Annotation: DUF3158 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 172 PF11358: DUF3158" amino acids 12 to 159 (148 residues), 160 bits, see alignment E=1.9e-51

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1974)

Predicted SEED Role

"Integrase regulator R"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K782 at UniProt or InterPro

Protein Sequence (172 amino acids)

>PFLU_RS09725 DUF3158 family protein (Pseudomonas fluorescens SBW25-INTG)
MNPLTSAQPMPFEALKQDAYRQLEHAASLKGLLKPFKGKGELVQLAQMAREIEAQLCDLM
EAVVQQAGQPPYSLLDIRLVLQNTSAGSTFLRWRTRDFARMGVSVWERQVCNKALPQVVR
EGLRRFECNRIALNLQMSVVHSLYRQATTCAIKMDSAERLLRQFTTAVEVSR