Protein Info for PFLU_RS09630 in Pseudomonas fluorescens SBW25-INTG

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 transmembrane" amino acids 14 to 35 (22 residues), see Phobius details amino acids 53 to 76 (24 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 108 to 130 (23 residues), see Phobius details amino acids 142 to 164 (23 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details amino acids 211 to 237 (27 residues), see Phobius details amino acids 251 to 272 (22 residues), see Phobius details amino acids 280 to 298 (19 residues), see Phobius details amino acids 304 to 326 (23 residues), see Phobius details amino acids 340 to 362 (23 residues), see Phobius details amino acids 368 to 392 (25 residues), see Phobius details PF07690: MFS_1" amino acids 19 to 355 (337 residues), 118.5 bits, see alignment E=1.7e-38 amino acids 245 to 396 (152 residues), 34.5 bits, see alignment E=5.6e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1953)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K766 at UniProt or InterPro

Protein Sequence (409 amino acids)

>PFLU_RS09630 MFS transporter (Pseudomonas fluorescens SBW25-INTG)
MNTSVTAGRPVARIATYLLLLINCLAPLAAIIVAPSLPQMQAHFAHVPNVEFLVPVSLAI
PGLMVALLSPLVGFFADRVGRKRLLIIAMVGYGVMGVLPLVLPSLHAIIVSRILLGCMEA
GVVTISTTLIGDYYNGALRQRYLALQTTFAASSAILFFMIGGALGEFGWQVPYVVYLVAI
VMAVFAYFLLREPMAEGGAGQSQEGSVRLRPSLLAVICALTLAGGAAFMVMQIQLAYLLG
DIGHGSPSTAGMIASAGSVMIVLGTLSVHLLLRLKLRIPHCLAVAFALIGLSFLMVPWAK
DVQLMLLIALINGLGCGLMLPSLAIWNMRELPSHRRGLGTGIWYGSYCLGAFLSPLLIVA
ATPYTGGVAATVGLAAWILLSMAVVALLCAMLSRPRSAFLSNACNIEEA