Protein Info for PFLU_RS09545 in Pseudomonas fluorescens SBW25-INTG

Annotation: TIGR03758 family integrating conjugative element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 79 transmembrane" amino acids 25 to 46 (22 residues), see Phobius details amino acids 56 to 77 (22 residues), see Phobius details PF11660: DUF3262" amino acids 3 to 77 (75 residues), 72.4 bits, see alignment E=1.5e-24 TIGR03758: integrating conjugative element protein, PFL_4701 family" amino acids 4 to 79 (76 residues), 104.5 bits, see alignment E=1.3e-34

Best Hits

KEGG orthology group: None (inferred from 99% identity to pfo:Pfl01_3016)

Predicted SEED Role

"hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K674 at UniProt or InterPro

Protein Sequence (79 amino acids)

>PFLU_RS09545 TIGR03758 family integrating conjugative element protein (Pseudomonas fluorescens SBW25-INTG)
MSMTDAQTSAFQNASGFSPQSSSTLWLSLVLVLALLWCAWVMWTAYRGWATGSVRFGAFG
GSAARVLLALLVLMFFTLS