Protein Info for PFLU_RS09535 in Pseudomonas fluorescens SBW25-INTG

Annotation: TIGR03750 family conjugal transfer protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 137 transmembrane" amino acids 36 to 55 (20 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details PF11990: DUF3487" amino acids 12 to 125 (114 residues), 128.7 bits, see alignment E=4.7e-42 TIGR03750: conjugative transfer region protein, TIGR03750 family" amino acids 14 to 124 (111 residues), 134.7 bits, see alignment E=6.3e-44

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1932)

Predicted SEED Role

"FIG00953508: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K5P8 at UniProt or InterPro

Protein Sequence (137 amino acids)

>PFLU_RS09535 TIGR03750 family conjugal transfer protein (Pseudomonas fluorescens SBW25-INTG)
MNDTIERLADGTLVFLPERLNRDPAVLRGLTNDEMWVALGTGAVIGLLSGVPLAITTASI
AVAPTGMIAGMTVVLSAGGTLLRRAKRARPETWLYRKLEWVLASRWRLGRGSLIVHSGAW
TVRRSRRLRPALSRWQP