Protein Info for PFLU_RS09510 in Pseudomonas fluorescens SBW25-INTG

Annotation: conjugative transfer ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 916 TIGR03744: conjugative transfer ATPase, PFL_4706 family" amino acids 26 to 913 (888 residues), 1486 bits, see alignment E=0 PF11130: TraC_F_IV" amino acids 37 to 307 (271 residues), 214 bits, see alignment E=1.1e-67

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1927)

Predicted SEED Role

"Type IV secretory pathway, VirB4 components"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K5P3 at UniProt or InterPro

Protein Sequence (916 amino acids)

>PFLU_RS09510 conjugative transfer ATPase (Pseudomonas fluorescens SBW25-INTG)
MRAGDSGNHAPAWKDWRNPLRPRATLADEAALYAHNPSFTDHLPWVEYLDTEQCFLLDDN
RSVGAVFELLPIGTEGREPDWLMAARDALEDALQDSFDERDQAPWVAQFFCQDDNDFSPY
LNRLTGYIQDSARGTVFTEAYLQLSRRHLKAIAKPGGLFEDKVVTRLPWRGNNRRVRLVV
YRWLGSGDEETGLSPVQSLQQACERIGASLQACGVQSTRVDGRGLYAWLVPWFNPAPTLT
DEAPEDFYRRVVYPEPGDGESLELPFDHDFAERLFFNEPRSDVQCGLWFFDDQPHRVMVV
DKLRRAPLIGQLTGETHKGDAVNALFDQLPEGTVMSLTLVVKPQDILEEQLNRLARKAIG
ENLASTQTRQDVEEARAIIGRQHKLYRGTLAFYVRGHDEQQLHQRSVSLANALLGTGLQP
VREGDEVAACNSYLRWLPMAYNPARDTRNWYTRLMFAQHLANLVPVWGRSTGTGHPGITL
FNRGGSPLSFDPLSRLDRAMNGHLLLFGPTGAGKSATLVTLLMQVMAVYRPRLFIVEAGN
SFGLQGDYFATQGLSVNKVQLKPGASVSLALFADAWRLVEQPDQVASLSIDELDDEAVAS
REDQRDVLGELEITARLMITGGEAKEEARLSRADRSLIRECILDAAQTCVTAGRQVLTRD
VRDALLRVAADQYLPEKRRERAQEMGESIDLFCQGFEGELFDREGTPWPESDVTIVDLAT
YAREGYEAQMSISYISLMNTVNNLAERDQYLGRPILMVTDEGHIITKNPLLAPFVVKGTK
MWRKLGAWFWLATQNLADFPTAAQTMLNMIEWWICLNMPPAEIEEIARFKKLTPAQKALL
LSASKEPGKYTEGVVLAKKLETLFRAVPPSLYLALAMTEPEEKAERWTLMQENGCSELDA
AFQVAERIDQARGIGT