Protein Info for PFLU_RS09490 in Pseudomonas fluorescens SBW25-INTG

Annotation: TIGR03756 family integrating conjugative element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details TIGR03756: integrating conjugative element protein, PFL_4710 family" amino acids 30 to 312 (283 residues), 435 bits, see alignment E=7.1e-135 PF06834: TraU" amino acids 38 to 301 (264 residues), 185.2 bits, see alignment E=9.4e-59

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1923)

Predicted SEED Role

"FIG00956406: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K5N9 at UniProt or InterPro

Protein Sequence (318 amino acids)

>PFLU_RS09490 TIGR03756 family integrating conjugative element protein (Pseudomonas fluorescens SBW25-INTG)
MPVACSSIPPTKLRPLALSILLACGPSMALDTASITSSVLSPNCLEYRVVGICFWLLCTP
FGCKVKTSTKVRHFIPELVVSSYATTGNNPWAEMATLSPPISGAEGGGNLITPNTHRANL
PRFKNVDGIGHPGGWIATQLASQSGYACASGATAFMPYYLSTLDSLAWRHGIPENFYPES
LMPGIREIGRQASGNMWGNIYPRQGFLVQPDDFKAAAVMAQRAGDVITRNGQPHVYLPLM
PAKHDGYWPPGPIVENDASTHKWQLLYPQVQPTCAIFPSDPVQSTDGGYAWSLWRRYSCC
KREGQTFLFSIDFEGDAS