Protein Info for PFLU_RS07935 in Pseudomonas fluorescens SBW25-INTG

Annotation: type 1 fimbrial protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF00419: Fimbrial" amino acids 29 to 165 (137 residues), 65.5 bits, see alignment E=3.5e-22

Best Hits

KEGG orthology group: K07345, major type 1 subunit fimbrin (pilin) (inferred from 100% identity to pfs:PFLU1612)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K5I6 at UniProt or InterPro

Protein Sequence (190 amino acids)

>PFLU_RS07935 type 1 fimbrial protein (Pseudomonas fluorescens SBW25-INTG)
MLNKLSQLTLACGACWLLAGTAHAADGQIEFTGSVTDNACTITTGDVNKSVTLDAVRIAD
FQPTVGSTAKAKKFTISLDNCSFATKKNVAITFSGQQDANDATLLGLTGENQVKGIAIQI
ADARDGKKLPLNTPTADYDLRAQSNTFDFTAAYVRTVADTTTGEGDDAVTTSGIGTGQVH
ALASFDVTYK