Protein Info for PFLU_RS06825 in Pseudomonas fluorescens SBW25-INTG

Annotation: alpha/beta fold hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 PF12146: Hydrolase_4" amino acids 13 to 171 (159 residues), 37.9 bits, see alignment E=1.9e-13 PF00561: Abhydrolase_1" amino acids 14 to 171 (158 residues), 37.5 bits, see alignment E=3.3e-13 PF12697: Abhydrolase_6" amino acids 15 to 179 (165 residues), 32.5 bits, see alignment E=2.2e-11

Best Hits

KEGG orthology group: None (inferred from 99% identity to pfs:PFLU1383)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KBN7 at UniProt or InterPro

Protein Sequence (199 amino acids)

>PFLU_RS06825 alpha/beta fold hydrolase (Pseudomonas fluorescens SBW25-INTG)
MVQLERSANYRSAQSIGGCIACLYAACYPADVSRLIALAPAGLPAAQLSPAMSEFLESGR
HPFGYRTVDELQGLWATVFTRPPKVPAFLARALAIKGALRYARVGKILSDFQGAGLYPLQ
LRLKQVEAPTLIVWGRNDRVFDVSCLHAAYSLLPQASICIIEEAGHVPYLECAEQTVDAL
KRFLSDERCPHAGVSTYKT