Protein Info for PFLU_RS06670 in Pseudomonas fluorescens SBW25-INTG

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 47 to 67 (21 residues), see Phobius details amino acids 81 to 106 (26 residues), see Phobius details amino acids 139 to 160 (22 residues), see Phobius details amino acids 166 to 187 (22 residues), see Phobius details amino acids 212 to 234 (23 residues), see Phobius details amino acids 254 to 277 (24 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details amino acids 314 to 339 (26 residues), see Phobius details amino acids 351 to 373 (23 residues), see Phobius details amino acids 403 to 423 (21 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 368 (352 residues), 169.4 bits, see alignment E=1.6e-53 PF00083: Sugar_tr" amino acids 45 to 191 (147 residues), 27.2 bits, see alignment E=2.7e-10 PF03137: OATP" amino acids 205 to 303 (99 residues), 31.9 bits, see alignment E=7e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1351)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K901 at UniProt or InterPro

Protein Sequence (448 amino acids)

>PFLU_RS06670 MFS transporter (Pseudomonas fluorescens SBW25-INTG)
MQNSTQAANAWRILFLLFLANLFNFFDRTIPAIIIEPIRMEWHLSDFQLGIIGTAFTIVY
AIAGLPLGRLADTGSRSKLMGWGLFAWSGLTAVNGLVGSFWTFLLVRMGIGIGEASYAPA
ANSLIGDLFPAHRRARAMGIFMLGLPLGLLLAFFTIGWMVKAFDSWRAPFFIAAVPGLIL
AVFMFYIKEPKRGAAETVQVSQERVDRPIRRVLAVPTFLWLVLAGLCFNFATYACNSFLV
PMLQRYFLMPLQDAAVATGVIVGLTGLVGLTLGGWIADKIHQRVANGRLLFAAFSLIIST
VTTAWALHAGRIEIGVFVALFSVGWLFAYNFYTCVYTAIQDVVEPRLRATAMALFFAGLY
LLGGGMGPIVVGGLSDHFAHSAMYAAGAEQMTEAYKAVGLHDAMYLIPVALFLTMLFLFQ
ASRSFVRDAKKMKEGLSGVEVPAAAVAV