Protein Info for PFLU_RS05150 in Pseudomonas fluorescens SBW25-INTG

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 87 to 107 (21 residues), see Phobius details amino acids 113 to 136 (24 residues), see Phobius details amino acids 147 to 170 (24 residues), see Phobius details amino acids 176 to 195 (20 residues), see Phobius details amino acids 207 to 227 (21 residues), see Phobius details amino acids 238 to 256 (19 residues), see Phobius details amino acids 277 to 298 (22 residues), see Phobius details amino acids 309 to 329 (21 residues), see Phobius details amino acids 341 to 360 (20 residues), see Phobius details amino acids 366 to 384 (19 residues), see Phobius details amino acids 411 to 431 (21 residues), see Phobius details amino acids 477 to 496 (20 residues), see Phobius details PF06609: TRI12" amino acids 24 to 192 (169 residues), 28.3 bits, see alignment E=6.5e-11 PF07690: MFS_1" amino acids 25 to 408 (384 residues), 168.2 bits, see alignment E=2.5e-53

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1038)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K5Z1 at UniProt or InterPro

Protein Sequence (504 amino acids)

>PFLU_RS05150 MFS transporter (Pseudomonas fluorescens SBW25-INTG)
MPPAATLSVASPPRTAKNGLALTAVCLVALMFGLEISSVPVILPTLERELGTGFQDAQWI
MNAYTLACTSVLMAAGTLADRFGRRRMLVLCLWLFGLASLACGLAEHASTLIAARFVQGI
GAGAMMICQFAILSHLFREPAARARAFAIWGVIAGVGLGFGPMVGALILAVADWRWVFLV
HVPLTVFTLVLLHVSVQESRDPAGNRLDIAGMLTLTLSVFALVYFITQGTEHGFGTPAML
GWAGLAVAALLLFIVVERRSAHPMFDFSVFRIQRFNGALMGSIGMNFSFWPFMIYLPLYF
QAGLGYDTLTTGGALLAYTLPTLLVPPLAERLALRYGAERIIPLGLGLMGAGFLSMAAAN
AAAQPSIVLVLSSCIAAGVGLALTNSPTTNTTTGSVSADRAGMASGIDLSARLITLALNI
ALMGLVLLLGINHQLAAVLPESTVLDWAAISQKIAAGKLASSMDLSVTDAQAALRHGVGW
AMLFAGWGACGLAWLSRSFFRRGH