Protein Info for PFLU_RS04330 in Pseudomonas fluorescens SBW25-INTG

Annotation: TIGR02099 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1271 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 1215 to 1234 (20 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 10 to 1270 (1261 residues), 1159.5 bits, see alignment E=0 PF13116: DUF3971" amino acids 515 to 792 (278 residues), 161.1 bits, see alignment E=4.6e-51 PF13502: AsmA_2" amino acids 1016 to 1260 (245 residues), 185 bits, see alignment E=1.7e-58

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU0868)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K7G5 at UniProt or InterPro

Protein Sequence (1271 amino acids)

>PFLU_RS04330 TIGR02099 family protein (Pseudomonas fluorescens SBW25-INTG)
MERLIRFFAALTRWGLGLCALLLVLAAVYVSLGRELTPLVAEYRAEVEVKAQAAVQMPLH
IGSLEGRWSGFAPVLLAHDVMVGEGSSALRLDQVEVVPDIWASLMAREVRIAHLQVSGLQ
LSVKEDKDGHWALQGLPVQDDQPLDPEQLLKRMQVVKRVSLLDSQVTLQPFDHAPVTLTY
VGLSLHTGATRQRLDARLTLPDGQPLAVSLRTRIRASQWKEGEVQAYLSLPQSDWAKWIP
AKLTQQWKLTQFKAGGEFWLNWAKGTVQSAVVRLNSPQVKGSYADRKPVHIENLALTAYL
QRSDTGLKVLFDSLAMNLGETRWESRLQVQQRLATDKEQEVWKLQADRLDLTPITPLLNA
LAPLPEGFAKTIQHLKATGLLRNVLVDFRPQDTTDQKVSFAANLERIGFDAYFGAPAARN
VSGSISGDLGHGELRMDSKDFSLHLDPIFAKPWQYIQANARLTWKLDKEGFTLIAPYIKV
LGEEGKIAADFLIRLHFDHNQEDYMDLRVGMVDGDGRFTPKYLPAVLSPALDEWLRTAIL
KGAVDEGFFQYQGSLNHDALPASRNISLFFKVHDAELAFQPGWPHVSKVKGEVFVEESGV
RILASKGQLLDTKVKDIYVNIPHAPEGKDSHLLLTGGFAGGLGDGLKILQDAPIGTASTF
AGWKGEGDLQGSLDLDIPLAKGAEPKIVVDFKTDKARLQLAEPTLDLTQLKGDFRFDSAK
GLSGQNITAQAFDRPITAQIFADGKPGNISTRVVAKGQVTVKRLTDWLKITQPLPVSGDI
PYQLQLTLDGADSQLMVSSNLKGVAVDLPAPFGMPASQGRDSVFRMTLQGAERRYWFDYG
ELANFTFAAPPDKFNDGRGELFLGDGDAVLPGAKGLRIRGVLSELDIDPWKKLVERYAGN
DPGGSAKQLLSGADFKVGKLTGLGTQFDQVTLQLDRKPAAWGLQLDSQQAKGTVNVPDAK
GAPIAINLQYVKLPAVDPTVQADENAPDPLASIDPKDIPALDIAIDQLFQGPDLIGAWSL
KIRPTAKGLAFNNLDLGLKGMQLKGAGGWEGAAGDSSSWYKGRLDGKNIGDVLKGWGYAP
TVTSQDFHLDVDGRWPGSPAYVGPKRFSGSLDAAFRNGQFVEVEGGAQALRVFGLLNFNS
IGRRLRLDFSDLLGKGLSYDRVKGLLAASNGVFVTREPITMTGPSTNLELNGTLDLVADR
VDAKLLVTLPVTNNLPIAALIVGAPAIGGALFLIDKLIGDRVSRFASVQYKVEGPWKDPK
ITFDKPFEKPN