Protein Info for PFLU_RS01235 in Pseudomonas fluorescens SBW25-INTG

Annotation: outer membrane porin, OprD family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details PF03573: OprD" amino acids 15 to 439 (425 residues), 335.7 bits, see alignment E=2.2e-104

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU0250)

Predicted SEED Role

"probable porin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KE50 at UniProt or InterPro

Protein Sequence (442 amino acids)

>PFLU_RS01235 outer membrane porin, OprD family (Pseudomonas fluorescens SBW25-INTG)
MVGAAMASFMLSAHADFIDDSHADVTLLNRYLNQQGRDVVNSNAKAHSIRDWGQGFEFNF
KSGYTDGPVGFGLDLQAFYGLKLDSGGDLNDKDHQGRYPGSMFPLDNGKSADQFGVLSPT
LKMRFAKDELRVGTLYGNNPVLANTDGRLYQQTNTGVQLVSKDLSDFTFTGGDIFKTKIR
NETGDQGMITAGGTQESDRFLFGGADYTGLQNTTVSLWYSNLEDYYQQFFLGAKRHDALS
VGAIDTDVRVFRSLGVGGNADGDKDFAAAGLYGDGTGKGRINQTTASLLESYSLDGHTVG
LGIQKNSGDSDFPYLDSGLNSGDNRQGPGSGADTPALTNLQLNKFQHAGERTWLAQYKYD
FGKLGLTGLTFSAGYAHGDDIRTAQGTTSEWERDVAVAYQVPTGTLKGLGVTWKNAHASP
DITGATVQDENRLYVSYVVPLW