Protein Info for PFLU_RS01155 in Pseudomonas fluorescens SBW25-INTG

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1021 transmembrane" amino acids 17 to 36 (20 residues), see Phobius details amino acids 335 to 355 (21 residues), see Phobius details amino acids 362 to 380 (19 residues), see Phobius details amino acids 391 to 414 (24 residues), see Phobius details amino acids 429 to 452 (24 residues), see Phobius details amino acids 464 to 490 (27 residues), see Phobius details amino acids 523 to 543 (21 residues), see Phobius details amino acids 855 to 874 (20 residues), see Phobius details amino acids 882 to 900 (19 residues), see Phobius details amino acids 906 to 926 (21 residues), see Phobius details amino acids 957 to 976 (20 residues), see Phobius details amino acids 982 to 1006 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 8 to 1004 (997 residues), 560.3 bits, see alignment E=3.8e-172

Best Hits

KEGG orthology group: None (inferred from 91% identity to pfl:PFL_0238)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KDJ6 at UniProt or InterPro

Protein Sequence (1021 amino acids)

>PFLU_RS01155 efflux RND transporter permease subunit (Pseudomonas fluorescens SBW25-INTG)
MKGSFNLSDWALKHQSFVWYLMFVALLMGVFSYMNLGREEDPSFTIKTMVIQTRWPGATQ
EETLKQVTDRIEKKLEELDSLDYVKSYTRPGESTVFVFLKDTTSAKAIPEVWYQVRKKID
DIRGTFPQGLQGPSFNDEFGDVFGSVYAFTGDGLSMRQLRDYVEQVRAEIRSVPGLGKVE
MIGQQDEVIYLNFSTRKLAALGIDQRQVVQSLQSQNAVTPAGVIEAGPERISVRTSGQFA
SEKDLANVNLRLNDRFYRLADIAEISRGYVDPARPMFRFNGKPAIGLAIAMQKGGNIQSF
GKALHERMDELTADLPVGVGVHKVSDQAEVVEEAVGGFTSALFEAVIIVLVVSFISLGMR
AGLVVACSIPLVLALVFVFMEYSGITMQRVSLGALIIALGLLVDDAMITVEMMITRLEKG
ETKEQAATYAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVAMLVSWVV
AVLFAPVIGVHILSANVKPHSAEPGRIGRAFNGGMLWAMRNRWWAIGITVALFVASVFSM
QFVQNQFFPSSDRPEILVDLNLPQNASINETRKAVDRLEAIIKDDPDIARWSTYIGQGAI
RFYLPLDQQLENPYYAQLVIVSKGLEERGELIARLQKRLRDDFVGIGSYVQPLEMGPPVG
RPIQYRVSGKDTDQVRKHAIELATLLDQNTHLGEIIYDWNEPGKVLRIDIAQDKARQLGL
SSEDVAQLMNSVVSGASVTQVHDDIYLINVVGRAEDAERGTPETLQNLQIVTPNGTSIPL
LAFATVRYELEQPLVWRRDRKPTITIKASVRDEMQPTDLVKQLKPEIDKFSAGLPVGYKV
ATGGTVEESGKAQGPIASVVPLMLFLMATFLMIQLHSVQKMFLVASVAPLGLIGVVLALI
PTGTPMGFVAILGILALIGIIIRNSVILVTQIHEYEVAGYTPWDAVVEATEHRRRPILLT
AAAASLGMIPIAREVFWGPMAYAMIGGIIIATLLTLLFLPALYVAWYKIREPKQDPQEKR
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