Protein Info for PFLU_RS00490 in Pseudomonas fluorescens SBW25-INTG

Annotation: DUF2914 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 transmembrane" amino acids 20 to 37 (18 residues), see Phobius details amino acids 43 to 60 (18 residues), see Phobius details amino acids 81 to 106 (26 residues), see Phobius details amino acids 112 to 131 (20 residues), see Phobius details amino acids 140 to 163 (24 residues), see Phobius details amino acids 169 to 189 (21 residues), see Phobius details amino acids 196 to 215 (20 residues), see Phobius details PF19346: DUF5924" amino acids 1 to 257 (257 residues), 377.5 bits, see alignment E=2.8e-117 PF11141: DUF2914" amino acids 268 to 333 (66 residues), 83.7 bits, see alignment E=5.9e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU0099)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K7B2 at UniProt or InterPro

Protein Sequence (343 amino acids)

>PFLU_RS00490 DUF2914 domain-containing protein (Pseudomonas fluorescens SBW25-INTG)
MQNLTRLITRILELMKRYPGVIALGGFVSGVGSFILVDRQQGMASWIAVIMLVSWLWLML
ENSFTQLFTKVFKREIPEPLLRYATQMIHQESLFFVLPFFFITTAWNSGQSVFTGLLGAA
ALVSIIDPLYYKWLAPKRSLFLALHTFTLFAALLTALPIILHLTTAESYKLALGVAMALS
IPSLAVSLPLRSLKGWAMLLGVTAAIGCAGWFLRSWVPPATLWMTEVAISTQLQDRTPGD
DLKEVTAAQLRSGGLYAYTAINAPRGLDERIYHVWKFNGKEVDRIALDIHGGRKEGYRAW
THKQNFPADAVGRWQVQVLTEDGQVIGVLRFKVTDSAQTDNPK