Protein Info for MPMX20_04712 in Enterobacter sp. TBS_079

Annotation: Pilin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 119 signal peptide" amino acids 34 to 34 (1 residues), see Phobius details amino acids 55 to 55 (1 residues), see Phobius details transmembrane" amino acids 35 to 54 (20 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 98 to 118 (21 residues), see Phobius details TIGR02758: type IV conjugative transfer system pilin TraA" amino acids 21 to 118 (98 residues), 126.6 bits, see alignment E=1.8e-41 PF05513: TraA" amino acids 54 to 116 (63 residues), 53.4 bits, see alignment E=1.4e-18

Best Hits

Swiss-Prot: 95% identical to PIL1_SALTI: Pilin (traA) from Salmonella typhi

KEGG orthology group: None (inferred from 84% identity to ecw:EcE24377A_E0073)

Predicted SEED Role

"FIG01279834: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (119 amino acids)

>MPMX20_04712 Pilin (Enterobacter sp. TBS_079)
MNFSLSKGGLPASVQNRAWQYCQMAWRGVTSKKALSRLAALSPLLLLGVGQMANATDLLA
GGKDDVKATFGADSFVMMCIIIAELIVGVAMYIRTKNLLILLGLVVVIVFTTVGLTFIN