Protein Info for MPMX20_04711 in Enterobacter sp. TBS_079

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 101 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 45 to 62 (18 residues), see Phobius details TIGR02762: type IV conjugative transfer system protein TraL" amino acids 7 to 100 (94 residues), 117.2 bits, see alignment E=2e-38 PF07178: TraL" amino acids 9 to 100 (92 residues), 81.6 bits, see alignment E=2.2e-27

Best Hits

Swiss-Prot: 99% identical to TRAL_SALTI: Protein TraL (traL) from Salmonella typhi

KEGG orthology group: K12068, conjugal transfer pilus assembly protein TraL (inferred from 87% identity to ecw:EcE24377A_E0074)

Predicted SEED Role

"IncF plasmid conjugative transfer pilus assembly protein TraL" in subsystem Type 4 secretion and conjugative transfer

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (101 amino acids)

>MPMX20_04711 hypothetical protein (Enterobacter sp. TBS_079)
MEGNDLDKYRFPKTLSEQNRIIGLPLDEAIPAAVVLLWGFFTKKYLFSLIIAAVIWQLIR
AAKRGKSSRWLYNWCYWYLPTELFRVVYRVIPDSSFRKWIK