Protein Info for MPMX20_04708 in Enterobacter sp. TBS_079
Annotation: hypothetical protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 53% identical to TRAB1_ECOLI: Protein TraB (traB) from Escherichia coli (strain K12)
KEGG orthology group: K12065, conjugal transfer pilus assembly protein TraB (inferred from 60% identity to asa:ASA_P5G028)Predicted SEED Role
"IncF plasmid conjugative transfer pilus assembly protein TraB" in subsystem Type 4 secretion and conjugative transfer
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (453 amino acids)
>MPMX20_04708 hypothetical protein (Enterobacter sp. TBS_079) MANVNKVVRRRQVALLIALVLGIGAGGAGTWMVSEMNLKKAPPAKAPKGEPAPDMTGVVN QSFDNKVQRSAIAEAQRLNKETQTEIKKLRTEMGLVSRDLKGSQDRIRELEDQNQLLQTQ LEAGKNFDSLSAEPLPGALASQGKPVPAGNVPPPTSFWPASGGQAPAAPVMTPVQRPGMM DSQEFSLPDTGPKKPRFPWISSGSFAEAIVVEGADANASVTGDKNTAPMQLRLTGKVQMP NDEEFDLTGCFVTLEAWGDVSSERAIVRTRSISCKLGDENIDQKIAGHVSFMGKNGIKGE VVMRNGQILLYAGGAGFLDGIGKGIEKASSTTVGVGATASMSAGDIGQAGLGGGVSSAAK TLSDYYIKRAEQYHPVIPIGAGNEVTLVFQDGFQLETLEEARAKAAARKKQNPPSSSSTP AAMPGNTPDMLKQLQDFRVGDTVDPTTGQVVTQ